RT-PCR is a technique that combines the reverse transcription of RNA with the PCR of cDNA.
This article introduces the related experimental steps of RT-PCR, hoping to help your academic research.
1.The reaction fluid is modulated in the PCR reaction tube according to the following composition.
Reagent | Quantity, for 50µl of reaction mixture |
10×One Step RNA PCR Buffer | 5µl |
25 mM MgCl2 | 10µl |
10 mM dNTP mix | 5µl |
RNase Inhibitor (40 U/µ l) | 1µl |
AMV-Optimized Taq | 1µl |
AMV RTase XL (5 U/µl) | 1µl |
Upstream specific primer | 1µl |
Downstream specific primer | 1µl |
Experimental sample RNA(≤1 µg Total RNA) | 1µl |
RNase Free dH2O | 24µl |
RNase Free dH2O | 24µl |
①. The total volume of the reaction is regulated according to the actual situation, and 20-50 μ l can be made to save reagents;
②.Add the components in the above table to 0.2ml or 0.5ml sterilized PCR thin-walled tube;
③. If the heating cover of PCR instrument is not used, add 30-50 μ l mineral oil to the upper layer of reaction mixture to prevent the sample was evaporated during PCR;
2.React according to the following conditions.
Step | Temperature, °C | Time, min | Number of cycles | Note |
Reverse transcription | 50 | 30 | 1 | |
Reverse transcriptase inactivation | 94 | 2 | 1 | |
Denaturation | 94 | 0.5 | 25-35 | |
Annealing | 37-65 | 0.5 | The annealing temperature is about 5 °C lower than the theoretical annealing temperature, and then optimized according to the reaction results | |
Extend | 72 | Depending on the size of the amplification product | Taq enzyme extends 1000 BP per minute | |
Final extension | 72 | 10 | 1 |
At the end of the reaction, 5 μ l of the amplified sample was taken, and the amplification results were analyzed by agarose gel electrophoresis. The size of the amplified fragment was determined by DNA marker or it was cryopreserved for later analysis.
Related reading: Introduction To Quantitative Real-Time PCR Southern Blot Protocol